Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs57737274 chr13:26631154 T/C 3.01E-6 118 41.77 40.67 13.75 KM Plot
THYM rs57910734 chr11:11842800 T/C 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs57998337 chr11:16505807 T/C 8.69E-9 119 40.67 52.22 7.15 KM Plot
THYM rs580016 chr12:120933977 T/C 1.67E-6 116 46.6 36.6 4.13 KM Plot
THYM rs58099509 chr1:9395956 CA/C 0.000241 117 50.13 51.38 30.55 KM Plot
THYM rs58259486 chr7:45314850 T/C 2.6E-5 118 50.07 35 14.9 KM Plot
THYM rs5829278 chr2:10959908 CT/C 0.000255 119 42.9 38.23 62.72 KM Plot
THYM rs58305906 chr8:39944935 T/C 8.94E-5 119 39.75 48.13 28.43 KM Plot
THYM rs5852191 chr3:118914062 TG/T 5.88E-13 117 44.38 35 3.83 KM Plot
THYM rs58536333 chr8:39930899 A/C 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs58580096 chr19:43396518 G/T 0.000134 118 44.38 26 28.43 KM Plot
THYM rs58880922 chr15:71815024 C/G 1.51E-6 116 39.75 47.63 12.52 KM Plot
THYM rs58906216 chr18:33630297 T/C 0.000136 119 49.4 35 51.23 KM Plot
THYM rs59050053 chr8:131708652 G/A 0 118 44.38 27.2 2.9 KM Plot
THYM rs59123116 chr19:43341077 T/C 0.000134 118 44.38 26 28.43 KM Plot